Opening a model with a relative path, for example `orca-slicer ./some.3mf`,
failed with "Loading of a model file failed." and "The file does not contain
any geometry data.", while the same file opened by an absolute path or by
drag and drop worked.
GUI_App::init_app_config() changes the working directory to <data_dir>/log,
and it runs from the GUI_App constructor because the app config is needed
early for instance checking. The input files are opened much later, in
post_init(), so a path still relative at that point resolved against the log
directory instead of the directory OrcaSlicer was started from, and the 3MF
reader failed to open it.
Resolve the input paths in CLI::setup(), which runs before GUI_App is
constructed and therefore before the working directory moves. Absolute paths
are returned unchanged, so the forms that open today are unaffected, and
custom open protocol URLs are passed through since post_init() hands those to
the downloader rather than the file loader.
The working directory change is left alone. It was added in #3248 so the TUTK
logs land in the data directory instead of the working directory (#3209).