Wiki + Readme: MD security and improvements (#9807)

* Wiki + Readme: MD, security and improvements

Standardized MD GitHub Wiki format
Removed outdated and malicious links
Modularized calibrations
Suggested calibration order added
Minor bug fixes
Image improvements and corrections
Added winget commands
Completed previous WIPs
Added new WIPs
Removed obsolete references
Visual Changes

Co-Authored-By: Noisyfox <timemanager.rick@gmail.com>
Co-Authored-By: dewi-ny-je <2866139+dewi-ny-je@users.noreply.github.com>
Co-Authored-By: Nico Domino <7415984+ndom91@users.noreply.github.com>
Co-Authored-By: Martin Ulmschneider <7497782+mulmschneider@users.noreply.github.com>
Co-Authored-By: Rodrigo <162915171+RF47@users.noreply.github.com>

* MD Indentation + images update

---------

Co-authored-by: Noisyfox <timemanager.rick@gmail.com>
Co-authored-by: dewi-ny-je <2866139+dewi-ny-je@users.noreply.github.com>
Co-authored-by: Nico Domino <7415984+ndom91@users.noreply.github.com>
Co-authored-by: Martin Ulmschneider <7497782+mulmschneider@users.noreply.github.com>
Co-authored-by: Rodrigo <162915171+RF47@users.noreply.github.com>

doc/Home.md

@@ -1,13 +1,15 @@
 # Welcome to the OrcaSlicer WIKI!
 
-Orca slicer is a powerful open source slicer for FFF (FDM) 3D Printers. This wiki page aims to provide an detailed explanation of the slicer settings, how to get the most out of them as well as how to calibrate and setup your printer. 
+Orca slicer is a powerful open source slicer for FFF (FDM) 3D Printers. This wiki page aims to provide an detailed explanation of the slicer settings, how to get the most out of them as well as how to calibrate and setup your printer.
 
 The Wiki is work in progress so bear with us while we get it up and running!
 
 ## Print Settings, Tips and Tricks (Work In Progress)
+
 The below sections provide a detailed settings explanation as well as tips and tricks in setting these for optimal print results.
 
 ### Quality Settings
+
 - [Layer Height Settings](quality_settings_layer_height)
 - [Line Width Settings](quality_settings_line_width)
 - [Seam Settings](quality_settings_seam)
@@ -15,12 +17,15 @@ The below sections provide a detailed settings explanation as well as tips and t
 - [STL Transformation](stl-transformation)
 
 ### Speed Settings
+
 - [Extrusion rate smoothing](extrusion-rate-smoothing)
 
 ### Multi material
+
 - [Single Extruder Multimaterial](semm)
 
 ### Printer Settings:
+
 - [Air filtration/Exhaust fan handling](air-filtration)
 - [Auxiliary fan handling](Auxiliary-fan)
 - [Chamber temperature control](chamber-temperature)
@@ -29,13 +34,23 @@ The below sections provide a detailed settings explanation as well as tips and t
 - [Pellet Printers (pellet flow coefficient)](pellet-flow-coefficient)
 
 ## Printer Calibration
-The guide below takes you through the key calibration tests in Orca - flow rate, pressure advance, print temperature, retraction, tolerances and maximum volumetric speed
-- [Calibration Guide](./Calibration)
-- [Adaptive Pressure Advance Guide](adaptive-pressure-advance)
+
+The [Calibration Guide](./print_settings/calibration/Calibration.md) takes you through the key calibration tests in Orca - flow rate, pressure advance, print temperature, retraction, tolerances, etc.
+
+- [Flow Rate](print_settings/calibration/flow-rate-calib.md)
+- [Pressure Advance](print_settings/calibration/pressure-advance-calib.md)
+- [Temperature](print_settings/calibration/temp-calib.md)
+- [Retraction](print_settings/calibration/retraction-calib.md)
+- [Tolerance](print_settings/calibration/tolerance-calib.md)
+- Advanced:
+  - [Volumetric Speed](print_settings/calibration/volumetric-speed-calib.md)
+  - [Adaptive Pressure Advance Guide](print_settings/calibration/adaptive-pressure-advance-calib.md)
+  - [Input Shaping](print_settings/calibration/input-shaping-calib.md)
+  - [Cornering (Jerk & Junction Deviation)](print_settings/calibration/cornering-calib.md)
 
 ## Developer Section
+
 - [How to build Orca Slicer](./How-to-build)
 - [Localization and translation guide](Localization_guide)
 - [Developer Reference](https://github.com/SoftFever/OrcaSlicer/blob/main/doc/developer-reference/Home.md)
-- [How to create profiles](./How-to-create-profiles)
-- [How to validate profiles](./How-to-validate-profiles)
+- [How to create profiles](./How-to-create-profiles)